Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)

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5, 18, 70, 92, 1076362, 102441, 43, 60, 83, 98...11, 13, 14, 22, 36...62, 10238, 8842, 11210, 9751, 6939, 103112, 1155, 48, 8920, 695, 32, 37, 48, 6613, 14, 22, 40, 51...5, 43, 70, 872945, 941, 27, 34, 43, 91...62, 1026, 7, 58, 6115, 17, 21, 28, 41...26, 43, 71, 78, 1095, 23, 31, 48, 11111, 13, 14, 22, 25...353, 8, 24, 9512, 50nucleoplasmcytosolU1 snRNA Mature intronlesstranscript derivedHistonepre-mRNA:CBCcomplexNXF1 PRPF8 PABPN1 ELAVL1 DDX39B CHTOP SRSF5 NCBP1 capped, methylated pre-mRNA WDR33 HNRNPC RBMX SRRM1 SF3A3 SRSF1 SNRPE capped, methylated pre-mRNA CWC25 NUP54 PPIH Me2-R108,R112-SNRPN RAE1 SRRM1 CSTF2T NXF1 POLR2A SUGP1 NCBP1 HNRNPC PRPF38ASF3B2 2xMe-SNRPD3 THOC7 HNRNPF ELAVL1SRSF2 PPIL4 PQBP1 NDC1 RNPS1 ELAVL1 POLR2F POLR2L YBX1 ZRSR2 CTNNBL1 HNRNPA2B1 THOC1 POLR2B SF3B5 PRPF6 PHF5A HNRNPA1 SF3A1 FIP1L1 POM121 capped pre-mRNA SRSF2Nup45 POLR2C U2AF1 NUP50 CTNNBL1 LSM6 LSM7 NUP98-5 POLR2G HNRNPUL1 pre-EJC:SpliceosomalC:pre-mRNP:CBCMature intronless transcript derived mRNA PPIL1 CSTF1 U4:U5:U6 tri-snRNPcomplexSRRT POLDIP3 YBX1 SNRNP70 CWC15 EIF4A3 SNRPB2 DDX5 HNRNPFPOM121C BUD31 NXF1 THOC3 PPWD12xMe-SNRPD1 NCBP1 CWC22 NUP188 SRSF4 HNRNPF SF3A3 CSTF3 PPIL4 PCF11 POLR2J CPSF3 NCBP2 PRPF4 PHF5A SNRNP70 AQR RNPS1 RBMX hSLU7NUP155 ISY1 ATAC C Complex withlariat containing5'-end cleaved mRNAFIP1L1 NUP210 DDX46 SF3B1 SF3B3 MAGOHB CWC15 SF3B3 DHX9 SRSF5 HNRNPR HNRNPU Me2-R108,R112-SNRPN POLR2G NCBP2 DHX15 HNRNPF POLR2B SYMPK SF3B2 CF I - 72 kDa subunit SF3B1 U2AF1L4 Cap Binding Complex(CBC)NUP188 SNRNP40 DHX16 SYMPK SNRPE Me2-R108,R112-SNRPB HNRNPL CWC22 NUP50 PPWD1 2xMe-SNRPD3 HNRNPA3 RBM5 FYTTD1 3' end cleaved,ligated exoncontaining complexCPSF1 THOC2 NHP2L1 EIF4A3 PRPF31 GLE1NCBP2 CD2BP2 ZMAT5 U5 snRNA RBMXLSM2 NCBP1 DDX23 HNRNPK NUP98-5 SF3B1 2xMe-SNRPD1 THOC7 HNRNPM ZC3H11A PUF60 SF3A3 NUP98-4 Me2-R108,R112-SNRPB MAGOH CPSF3 PRPF8 SNRNP48 PCBP2 PRPF8 PCBP2 HNRNPH1 CPSF7 GCFC2 Me2-R108,R112-SNRPB HNRNPUSNRPA1 ALYREF NUP98-4 POLR2D NUPL1-2 POLR2L ELAVL1 LSM4 DHX38 SNW1 ZC3H11A POM121C HNRNPU POLR2F EFTUD2 NHP2L1 CHERP lariat containing 5'-end cleaved mRNA ELAVL2 HNRNPCSNRNP48 CSTF3 XAB2 DDX42 capped, methylated pre-mRNA TXNL4A SRRM1 CDC40 NUP35 POLR2H GTF2F1 SNRPG U5 snRNA EFTUD2 SRSF1 ATPSNRPB2 WBP11 RBM17 SRRT SF3A2 SF3B5 CCAR1 CDC5L DHX9 DDX23 Me2-R108,R112-SNRPB POLDIP3 2xMe-SNRPD1 POLR2B HNRNPA1 POLR2J CSTF1 U2AF2 SNRPE CWC15 GTF2F2 DDX42 SNRPD2 POLR2I SF3B6 SRSF9 POLR2G USP39 PQBP1 CSTF2T SNRPD2 SUGP1 NUP210 HNRNPK DDX46 NUP98-5 CSTF3 CSTF1 CPSF7 2xMe-SNRPD1 cappedpre-mRNA:CBC:RNAPol II(phosphorylated)complexMAGOH CF I - 68 kDa subunit UPF3B HNRNPC POLR2L CPSF2 SNW1 SNRPF NPC:NXF1:NXT1:EJC:CBC:mRNAHNRNPA0 SF3B1 PRPF8 SRSF2 Mature Intronless transcript derived Histone mRNA 2xMe-SNRPD3 NUP214 ALYREF THOC2 SEH1L-2 U6 ATAC snRNA CD2BP2 PDCD7 SF3B3 SYF2 PPIE PCF11 Mature intronless transcript derived Histone mRNA PCF11 WDR33 GTF2F2 Nup45 NUP160 EIF4A3 CPSF4 SRRM1 HNRNPD PCBP2 Mature intronlessderivedmRNA:TAP:Aly/RefcomplexNUP54 SNRPE SNRPE SNRPF HNRNPC THOC6 LSM6 WDR33 SRRM1 CWC15 U6 ATAC snRNPDDX42 HNRNPM NUP43 DNAJC8 SRSF3 PRPF6 HSPA8 DHX9 U5 snRNA SNRNP200 CSTF1 PPIL4 CPSF3 HNRNPD WBP4 Me2-R108,R112-SNRPB POLR2G Mature intronlessderived mRNAcomplexCHTOP PHF5A Me2-R108,R112-SNRPN CPSF2 SNRPA1 NCBP2 PAPOLA U2AF2 SNRPG CWC27NUDT21 NUP153 NUP155 METTL14 NCBP2 DDX5 CSTF2 SNRPG 2xMe-SNRPD3 SF3B1 mRNA with spliced exons SNRNP200 CSTF1 NUP98-3 CPSF4 2xMe-SNRPD3 2xMe-SNRPD1 CPSFPOLR2F SNRPD2 XAB2 U2 snRNA PDCD7 HNRNPA3 TPR NUP98-3 SRSF1 PABPN1 CHTOPTHOC1 NCBP2 EFTUD2 PCF11 HNRNPU DDX23 GTF2F1 GTF2F2 DDX42 DHX38 RAE1 CSTF1 SNW1U4atac snRNA SNRPG NXT1 SF3B1 SRSF3 SRRM1 POLR2H POLR2E NXF1 POLR2A SNRPD2 PQBP1 HSPA8 POLR2E 2xMe-SNRPD3 WDR33 U2SURP CPSFDHX15 CWC15 SF3A1 NUP205 CPSF4 Mature intronless derived mRNA POLR2G SF3B4 Me2-R108,R112-SNRPB CF IDHX38 CSTF3 LSM6 POM121C SRSF4 Me2-R108,R112-SNRPN PUF60 HNRNPM HNRNPC PAPOLA DDX23 XAB2NCBP1 ALYREF2xMe-SNRPD3 PRPF4 POLR2H SNRPE SRSF3 GTF2F1 MAGOHB SARNP SF3B6 GTF2F2 SRSF5 PCBP1 EFTUD2 NHP2L1 HNRNPH2 NUP88 Me2-R108,R112-SNRPB POLR2A SRSF7 HNRNPA0 SRSF1 NXF2 UPF3B EIF4A3 NCBP2 HNRNPM POLR2K FUSPOLR2D POLR2C NUP153 PPIE WBP11 POLR2E U2AF2 NUDT21 capped, methylated pre-mRNA NUP37 U2AF2 U12 snRNA FYTTD1 NUP107 POLR2D CF I - 68 kDa subunit NUP37 THOC1 SF3B1 NUP107 GTF2F1 DDX5 SF3B2 SLBP U4 snRNPSNRNP200 SRRM1 CTNNBL1 PLRG1 Spliceosomal BComplexCleavage andPolyadenylationComplexNuclear Pore Complex(NPC)CD2BP2 WDR33 ISY1 2xMe-SNRPD3 CSTF2 CPSF2 PPIL6 LSM8 ZMAT5 GTF2F1 POLR2H SRSF6 NCBP1 2xMe-SNRPD3 RNPS1 NHP2L1 CSTF2 AAAS WDR33 GTF2F2 CPSF1 CSTF2 NUP98-5 SF3A3 2xMe-SNRPD1 POLR2K SRRM1 HNRNPM POLR2B SF3B3 GTF2F1 CPSF2 FYTTD1 U4 ATAC snRNPCPSF3 DDX42 HNRNPK SRSF7 U12 snRNA EIF4E CWC15 HNRNPA1 SRSF11 PCBP1 DHX15 LSM2 SRSF1 U2AF1L4 POLR2I HNRNPA0 2xMe-SNRPD1 HNRNPA2B1 NHP2L1 ISY1 YBX1 CTNNBL1 CPSF7 PRPF19 CWC25 POLDIP3 ELAVL1 POLR2C ALYREF U1 snRNPNUP155 DDX39B SNRPA1 POLR2B CRNKL1 EFTUD2 POLR2G HNRNPL PPIL4 NXF1NUP54 SRSF1 PPIE POLR2K YBX1 SRRT PTBP1 SRSF4 WBP4 DDX46 SRSF5 DNAJC8 GPKOW 2xMe-SNRPD1 HNRNPH1 POLR2H WBP11 U2AF1,U2AF1L4DDX39A HNRNPH1 SF3B6 PABPN1 GTF2F1 NUP37 RBM5 ALYREFPOLR2A HNRNPF NUPL1-2 NCBP2 CF I - 68 kDa subunit ZRSR2 Nuclear Pore Complex(NPC)DHX16 NXF1SMNDC1 SRSF7 HNRNPUL1 SRSF11 SEH1L-2 HNRNPD LSM2-8 complexHNRNPA3SNRPG NUP210 LSM2 TRA2B HNRNPA3 CHTOP CTNNBL1 CDC5L POLR2K PPIL6 POLR2A PQBP1 U1 snRNA CPSF7 PRPF31 PAPOLA SNRPG 2xMe-SNRPD3 RANBP2 SNRPE HNRNPH2 NXF1,2:NXT1::polyadenylated, capped mRNA:CBC:EJC:TREX:SRSF proteinsSF3B3 SRSF5 THOC1 SNW1 PPIL1 PPIL1 SRSF3 CCAR1 PRPF19 HSPA8 Magoh-Y14 complexSNRNP35 SNRPG RAE1 CPSF3 NCBP1 SRSF6 AAAS U2AF1 U12 snRNA GTF2F1 CCAR1POLDIP3 LUZP4 RBM8A SYMPK NUP205 Me2-R108,R112-SNRPB Mature intronless transcript derived mRNA NUDT21 SF3B6 ALYREF MAGOHB SNRPE POLR2L DDX42 CSTF3 PCF11 SNRNP48 SRSF6 NUP98-3 SF3B6 SNRNP40 POLR2G SRSF2 NUPL2 SNRPF PCBP2BUD31 SNRPG SNRPB2 POLR2F POLR2B CSTF2T CHERP SF3B6 RBM17 CPSF3 SF3A2 CRNKL1 NUP88 SF3B6 SNRPG SYMPK Me2-R108,R112-SNRPB POLR2D U2AF1L4 HNRNPA0 U2AF1L4 SNRPF PCF11 SNRNP25 DDX42 U2AF2 GTF2F1 ALYREF SpliceosomalIntermediate C(Bact) ComplexPOLR2E NCBP1 SF3B3 SF3B4 HNRNPH1 U11 snRNA POLR2F PRCC POLR2A FIP1L1 NCBP1 DDX46 SNRPF MAGOHB p-S5-POLR2A CDC5L NUP160 NXF1 SRSF4 U12 snRNP2xMe-SNRPD3 NUDT21 ALYREF SRSF6 SRSF6 CPSF2 CLP1 SNRPA1 SRSF2 PCBP1 SUGP1 Me2-R108,R112-SNRPB NCBP1 SF3B2 EFTUD2 NHP2L1 POLR2K SRSF5 DDX46 U11 snRNPPRCC LSM7 SNRPA1 FUS SF3B2 SRSF3 hSLU7 CPSF7 RBM8A U5 snRNA POLR2J SNRPD2 SRSF6 WDR33 DNAJC8 RBMX NUDT21 SNRPG NXF1 NCBP2 DDX23 CWC25 NUP214 WDR33 NUP160 CRNKL1 SRRM1 U6 snRNA POM121C SRSF3 PCF11 NXF1 YBX1 POLR2H NUP133 DDX42 HNRNPH1ALYREF, FYTTD1,LUZP4HNRNPR NCBP1 SF3B4 SNRPF CSTF1 Mature intronless transcript derived Histone mRNA POLR2I CHTOPGTF2F2 RNPS1 SF3A2 POLR2D SNRPE LSM7 GTF2F2 U2AF1 WBP4CPSF1 SF3B4 PPIH SNW1 RBM8A SRSF6