Valine, leucine and isoleucine degradation (Caenorhabditis elegans)
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Krebs Cycle
Valine, leucine and isoleucine biosynthesis
Red gradient: fold change > 1.5 Green gradient: fold change < 1.5 Left: daf-2 Middle: daf-2;pept-1 Right: daf-2;pept-1;daf-16
F53A2.7
Acetyl-CoA
ech-6
tag-173
ech-2
S-(3-Methylbutanoyl)-dihydrolipoamide-E
ivd-1
ech-6
ech-5
Acetoacetic acid
acdh-10
Branched-chain fatty acid
K09H11.1
Acetoacetyl-CoA
hacd-1
ech-3
2-Methylacetoacetyl-CoA
acdh-7
acdh-10
ZK669.4
pcca-1
3-Hydroxy-3-methylglutaryl-CoA
Propionyl-CoA
ech-7
S-Methylmalonyl-CoA
acdh-8
Methylmalonic acid
(S)-3-Hydroxyisobutyric acid
acdh-3
(S)-3-Hydroxyisobutyryl-CoA
S-2-Methylbutanoyl-CoA
T08B2.7
3-Methyl-1-hydroxybutyl-ThPP
S-Methylmalonic acid semialdehyde
acdh-10
Isobutyryl-CoA
B0303.3
bcat-1
T02G5.7
R-Methylmalonyl-CoA
Ketoleucine
L-Leucine
Methacrylyl-CoA
acdh-7
Isovaleryl-CoA
L-Valine
acdh-8
S-3-Methyl-2-oxopentanoic acid
C05C10.3
T08B2.7
Y39E4A.3
Y39E4A.3
ech-2
K09H11.1
2-Methyl-1-hydroxybutyl-ThPP
Succinyl-CoA
ech-8
F32B6.2
acdh-7
acdh-8
L-Isoleucine
S-(2-Methylpropionyl)-dihydrolipoamide-E
K09H11.1
pccb-1
ard-1
3-Methylglutaconyl-CoA
ech-1
Tiglyl-CoA
Y71G12B.10
ech-9
2-Methyl-3-hydroxybutyryl-CoA
B0272.3
3-Hydroxyisovaleryl-CoA
acdh-3
ech-5
3-Methylcrotonyl-CoA
kat-1
F54C8.1
T02G5.4
ech-3
a-Ketoisovaleric acid
2-Methyl-1-hydroxypropyl-ThPP
tag-173
Y44A6D.5
ech-7
S-(2-Methylbutanoyl)-dihydrolipoamide-E
ech-1
Description
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Compare
Revision
Action
Time
User
Comment
106022
view
11:54, 16 August 2019
MaintBot
HMDB identifier normalization
87854
view
11:53, 25 July 2016
MirellaKalafati
Ontology Term : 'classic metabolic pathway' added !
85047
view
10:09, 10 April 2016
Egonw
Replaced a Wikipedia ID with a ChEBI ID.
84465
view
19:13, 25 February 2016
AlexanderPico
Quick edit to datanode annotation or property
78284
view
08:33, 22 December 2014
Egonw
Added a ChEBI identifier.
78283
view
08:15, 22 December 2014
Egonw
Added missing GraphId's.
78282
view
17:10, 21 December 2014
Egonw
Connected dots.
68480
view
20:45, 5 July 2013
MaintBot
Updated to 2013 gpml schema
58834
view
23:31, 20 February 2013
MaintBot
Updated Ensembl and UniProt data source
54697
view
12:34, 7 December 2012
Andra
RDF Tidy
48303
view
04:16, 18 May 2012
Khanspers
Updating PubChem xrefs
40633
view
19:57, 1 March 2011
MaintBot
Removed redundant pathway information and comments
36249
view
12:21, 12 March 2010
Pieter Giesbertz
Specify description
34885
view
00:16, 2 February 2010
Khanspers
Modified categories
34485
view
11:58, 11 December 2009
Pieter Giesbertz
Periodical save, work in progress
34484
view
11:16, 11 December 2009
Pieter Giesbertz
New pathway
External references
DataNodes
View all...
Name
Type
Database reference
Comment
(S)-3-Hydroxyisobutyric acid
Metabolite
HMDB0000023 (HMDB)
(S)-3-Hydroxyisobutyryl-CoA
Metabolite
HMDB0001052 (HMDB)
2-Methyl-1-hydroxybutyl-ThPP
Metabolite
HMDB0012310 (HMDB)
2-Methyl-1-hydroxypropyl-ThPP
Metabolite
HMDB0006866 (HMDB)
2-Methyl-3-hydroxybutyryl-CoA
Metabolite
HMDB0001356 (HMDB)
2-Methylacetoacetyl-CoA
Metabolite
HMDB0001157 (HMDB)
3-Hydroxy-3-methylglutaryl-CoA
Metabolite
HMDB0001375 (HMDB)
3-Hydroxyisovaleryl-CoA
Metabolite
HMDB0006870 (HMDB)
3-Methyl-1-hydroxybutyl-ThPP
Metabolite
HMDB0006865 (HMDB)
3-Methylcrotonyl-CoA
Metabolite
HMDB0001493 (HMDB)
3-Methylglutaconyl-CoA
Metabolite
25244136 (PubChem-compound)
Acetoacetic acid
Metabolite
CHEBI:15344 (ChEBI)
Acetoacetyl-CoA
Metabolite
HMDB0001484 (HMDB)
Acetyl-CoA
Metabolite
HMDB0001206 (HMDB)
B0272.3
GeneProduct
WBGene00007129 (Ensembl)
B0303.3
GeneProduct
WBGene00015125 (Ensembl)
Branched-chain fatty acid
Metabolite
CHEBI:35819 (ChEBI)
C05C10.3
GeneProduct
WBGene00007330 (Ensembl)
F32B6.2
GeneProduct
F32B6.2 (Ensembl)
F53A2.7
GeneProduct
WBGene00009952 (Ensembl)
F54C8.1
GeneProduct
186222 (Entrez Gene)
Isobutyryl-CoA
Metabolite
HMDB0001243 (HMDB)
Isovaleryl-CoA
Metabolite
HMDB0001113 (HMDB)
K09H11.1
GeneProduct
178962 (Entrez Gene)
Ketoleucine
Metabolite
HMDB0000695 (HMDB)
L-Isoleucine
Metabolite
HMDB0000172 (HMDB)
L-Leucine
Metabolite
HMDB0000687 (HMDB)
L-Valine
Metabolite
HMDB0000883 (HMDB)
Methacrylyl-CoA
Metabolite
HMDB0001011 (HMDB)
Methylmalonic acid
Metabolite
HMDB0000202 (HMDB)
Propionyl-CoA
Metabolite
HMDB0001275 (HMDB)
R-Methylmalonyl-CoA
Metabolite
HMDB0002255 (HMDB)
S-(2-Methylbutanoyl)-dihydrolipoamide-E
Metabolite
HMDB0006869 (HMDB)
S-(2-Methylpropionyl)-dihydrolipoamide-E
Metabolite
HMDB0006868 (HMDB)
S-(3-Methylbutanoyl)-dihydrolipoamide-E
Metabolite
HMDB0006867 (HMDB)
S-2-Methylbutanoyl-CoA
Metabolite
23724628 (PubChem-compound)
S-3-Methyl-2-oxopentanoic acid
Metabolite
47 (PubChem-compound)
S-Methylmalonic acid semialdehyde
Metabolite
HMDB0002217 (HMDB)
S-Methylmalonyl-CoA
Metabolite
HMDB0002310 (HMDB)
Succinyl-CoA
Metabolite
HMDB0001022 (HMDB)
T02G5.4
GeneProduct
WBGene00020164 (Ensembl)
T02G5.7
GeneProduct
WBGene00020166 (Ensembl)
T08B2.7
GeneProduct
WBGene00020347 (Ensembl)
Tiglyl-CoA
Metabolite
HMDB0002054 (HMDB)
Y39E4A.3
GeneProduct
Y39E4A.3 (WormBase)
Original kegg element: gene;12;cel:F27D4.5 cel:Y39E4A.3
Y44A6D.5
GeneProduct
180361 (Entrez Gene)
Y71G12B.10
GeneProduct
WBGene00022150 (Ensembl)
ZK669.4
GeneProduct
174279 (Entrez Gene)
a-Ketoisovaleric acid
Metabolite
HMDB0000019 (HMDB)
acdh-10
GeneProduct
T08G2.3 (WormBase)
Original kegg element: gene;58;cel:K05F1.3 cel:K09H11.1 cel:T08G2.3 cel:T25G12.5
acdh-3
GeneProduct
K06A5.6 (WormBase)
Original kegg element: gene;41;cel:K06A5.6
acdh-7
GeneProduct
T25G12.5 (WormBase)
Original kegg element: gene;58;cel:K05F1.3 cel:K09H11.1 cel:T08G2.3 cel:T25G12.5
acdh-8
GeneProduct
K05F1.3 (WormBase)
ard-1
GeneProduct
F01G4.2 (WormBase)
bcat-1
GeneProduct
K02A4.1 (WormBase)
Original kegg element: gene;37;cel:K02A4.1 cel:Y44A6D.5
ech-1
GeneProduct
C29F3.1 (WormBase)
ech-2
GeneProduct
F38H4.8 (WormBase)
Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-3
GeneProduct
F43H9.1 (WormBase)
Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-5
GeneProduct
F56B3.5 (WormBase)
Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-6
GeneProduct
T05G5.6 (WormBase)
Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-7
GeneProduct
Y105E8A.4 (WormBase)
Original kegg element: gene;57;cel:C29F3.1 cel:F38H4.8 cel:F43H9.1 cel:F56B3.5 cel:T05G5.6 cel:T08B2.7 cel:Y105E8A.4
ech-8
GeneProduct
F01G10.2 (WormBase)
ech-9
GeneProduct
F01G10.3 (WormBase)
hacd-1
GeneProduct
R09B5.6 (WormBase)
ivd-1
GeneProduct
C02B10.1 (WormBase)
Original kegg element: gene;41;cel:K06A5.6
kat-1
GeneProduct
T02G5.8 (WormBase)
pcca-1
GeneProduct
F27D9.5 (WormBase)
pccb-1
GeneProduct
F52E4.1 (WormBase)
tag-173
GeneProduct
F27D4.5 (WormBase)
Original kegg element: gene;43;cel:F27D4.5 cel:Y39E4A.3
Annotated Interactions
No annotated interactions
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