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Gene and protein databases are built in sync with Ensembl's build releases. The BridgeDb system can generate Derby database for WikiPathways from any "ensemblized" genome database. Our current sources include:

  • Ensembl for vertebrates and other eukaryotic species
  • Ensembl Genomes for fungi, metazoa, plants, protists and bacterial collections

Small molecule, metabolite databases are generated from the following resources:

The interaction database are generated from the following resource:

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