Vitamin A and carotenoid metabolism (WP716)
Homo sapiens
This pathway is about carotenoid and vitamin A metabolism. The initial version was created by the NuGO focusteam on Carotenoid metabolism. It was used to test a text mining workflow which added some additional entities (see Waagmeester et al. 2009 [https://www.ncbi.nlm.nih.gov/pubmed/19715393]).
Authors
Andra Waagmeester , Paolo Romano , Alex Pico , Chris Evelo , Susan Coort , Thomas Kelder , Kristina Hanspers , Alla Kuchinsky , Anwesha Bohler , Daniela Digles , Egon Willighagen , Martina Summer-Kutmon , Zahra Roudbari , Friederike Ehrhart , Denise Slenter , Eric Weitz , and Conroy lipidsCited In
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Organism
Homo sapiensCommunities
MicronutrientsAnnotations
Pathway Ontology: retinol metabolic pathway vitamin A and metabolites signaling pathway metabolic pathway of cofactors, vitamins, nutrients
Participants
Label | Type | Compact Identifier | Comment |
---|---|---|---|
Betacarotene | Metabolite | hmdb:HMDB0000561 | |
RetinolVitamin A | Metabolite | hmdb:HMDB0000305 | |
4-oxo-13,14-dihydroretinoic acid | Metabolite | lipidmaps:LMPR01090068 | |
11-cis-Retinol | Metabolite | hmdb:HMDB0006216 | |
all-trans RetinolVitamin A | Metabolite | hmdb:HMDB0000305 | |
4-oxo-Retinoic acid | Metabolite | hmdb:HMDB0006285 | |
Beta-Cryptoxanthin | Metabolite | hmdb:HMDB0002268 | |
Zeaxanthin | Metabolite | hmdb:HMDB0002789 | |
Lutein | Metabolite | hmdb:HMDB0003233 | |
11-cis-Retinal | Metabolite | hmdb:HMDB0002152 | |
Betacarotene | Metabolite | hmdb:HMDB0000561 | |
Lycopene | Metabolite | hmdb:HMDB0003000 | |
Retinyl ester | Metabolite | hmdb:HMDB0003598 | |
all-trans Retinal | Metabolite | hmdb:HMDB0001358 | |
All-trans-13,14-dihydroretinol | Metabolite | lipidmaps:LMPR01090047 | |
9-cis-Retinal | Metabolite | hmdb:HMDB0006218 | |
Vitamin D3 | Metabolite | hmdb:HMDB0000876 | |
all-trans Retinoic acidVitamin A acid | Metabolite | hmdb:HMDB0001852 | |
Violaxanthin | Metabolite | hmdb:HMDB0003101 | |
13,14 dihydroretinal | Metabolite | lipidmaps:LMPR01090067 | |
Canthaxanthin | Metabolite | hmdb:HMDB0003154 | |
13,14-dihydroretinoic acid | Metabolite | lipidmaps:LMPR01090066 | |
9-cis-Retinoic acid | Metabolite | lipidmaps:LMPR01090065 | |
Astaxanthin | Metabolite | hmdb:HMDB0002204 | |
9-cis-Retinol | Metabolite | hmdb:HMDB0006217 | |
Alpha-Carotene | Metabolite | hmdb:HMDB0003993 | |
RetinolVitamin A | Metabolite | hmdb:HMDB0000305 | |
beta 10' apocarotenal | Metabolite | lipidmaps:LMPR01071053 | |
Betacarotene | Metabolite | hmdb:HMDB0000561 | |
Retinyl ester | Metabolite | hmdb:HMDB0003598 | |
RetinalVitamin A aldehyde | Metabolite | hmdb:HMDB0001358 | |
Betacarotene | Metabolite | hmdb:HMDB0000561 | |
Bcmo1 | GeneProduct | ncbigene:53630 | |
Rbp7 | GeneProduct | ncbigene:116362 | |
Aldh1a1 | GeneProduct | ncbigene:216 | |
RARa | GeneProduct | ncbigene:5914 | |
Aldh1a2 | GeneProduct | ncbigene:8854 | |
Abcg8 | GeneProduct | ncbigene:64241 | |
Rdh12 | GeneProduct | ncbigene:145226 | |
Rdh5 | GeneProduct | ncbigene:5959 | |
Dhrs3 | GeneProduct | ncbigene:9249 | |
Cyp26b1 | GeneProduct | ncbigene:56603 | |
Npc1l1 | GeneProduct | ncbigene:29881 | |
Aldh1a3 | GeneProduct | ncbigene:220 | |
Aldh1a3 | GeneProduct | ncbigene:220 | |
Abcg5 | GeneProduct | ncbigene:64240 | |
Lpl | GeneProduct | ncbigene:4023 | |
Cyp2e1 | GeneProduct | ncbigene:1571 | |
RPE65 | GeneProduct | ncbigene:6121 | |
Bcdo2 | GeneProduct | ncbigene:83875 | |
MAPK | GeneProduct | ncbigene:5594 | |
Scarb1 | GeneProduct | ncbigene:949 | |
Sult2b1 | GeneProduct | ncbigene:6820 | |
Lrat | GeneProduct | ensembl:ENSG00000121207 | |
RXRb | GeneProduct | ncbigene:6257 | |
Rdh10 | GeneProduct | ncbigene:157506 | |
Retsat | GeneProduct | ncbigene:54884 | |
Rbp1 | GeneProduct | ncbigene:5947 | |
Rdh12 | GeneProduct | ncbigene:145226 | |
RXRa | GeneProduct | ncbigene:6256 | |
Adh4 | GeneProduct | ncbigene:127 | |
Sult1a1 | GeneProduct | ncbigene:6817 | |
Cyp26a1 | GeneProduct | ncbigene:1592 | |
Awat | GeneProduct | ncbigene:158835 | |
Bcmo1 | GeneProduct | ncbigene:53630 | |
Cd36 | GeneProduct | ncbigene:948 | |
RARg | GeneProduct | ncbigene:5916 | |
Aldh1a2 | GeneProduct | ncbigene:8854 | |
Scarb1 | GeneProduct | ncbigene:949 | |
Lrat | GeneProduct | ensembl:ENSG00000121207 | |
Aldh1a1 | GeneProduct | ncbigene:216 | |
Rdh5 | GeneProduct | ncbigene:5959 | |
Rdh8 | GeneProduct | ncbigene:50700 | |
Adh1 | GeneProduct | ncbigene:124 | |
RXRg | GeneProduct | ncbigene:6258 | |
Crabp2 | GeneProduct | ncbigene:1382 | |
Crabp1 | GeneProduct | ncbigene:1381 | |
Rlbp1 | GeneProduct | ncbigene:6017 | |
Rbp2 | GeneProduct | ncbigene:5948 | |
Bcmo1 | GeneProduct | ncbigene:53630 | |
Rbp4 | GeneProduct | ncbigene:5950 | |
RARb | GeneProduct | ncbigene:5915 | |
Retinol dehydrogenases | GeneProduct | ncbigene:195814 | |
ARAT | Protein | ncbigene:8694 |
References
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