7-oxo-C and 7-beta-HC pathways (WP5064)
Homo sapiens
The Oxysterol group of compounds are oxygenated derivatives of cholesterol or its sterol precursors, e.g. 7-dehydrocholesterol (7-DHC) or desmosterol. There are three mechanisms leading to the formation of oxysterols: 1. Enzymatically (first steps of sterol metabolism, being intermediates for the formation of steroid hormones, bile acids and 1,25-dihydroxyvitamin D3); see [https://www.wikipathways.org/index.php/Pathway:WP4545 WP4545]. 2. Non-enzymatically by encountering reactive oxygen species (ROS), providing a second pool of metabolites (this pool also includes oxidized cholesterol molecules taken in from diet); described in this pathway. 3. Generation by the gut microflora and uptake through the enterohepatic circulation. Previously oxysterols where though to be inactive metabolic intermediates, however recent findings have established that these metabolites are involved in cholesterol homoeostasis, can be ligands to nuclear and G protein-coupled receptors and biomarkers of diseases (for example Niemann-Pick disease). This pathway describes Figure 4 and 5 from Griffiths et al (2020) [https://dx.doi.org/10.1016%2Fj.prostaglandins.2019.106381] and will be extended with disease information.
Authors
Denise Slenter , Eric Weitz , and Egon WillighagenCited In
Are you planning to include this pathway in your next publication? See How to Cite and add a link here to your paper once it's online.
Organism
Homo sapiensCommunities
Inborn Errors of Metabolism (IEM) Pathways Lipids and LIPID MAPSAnnotations
Pathway Ontology: cholesterol metabolic pathway classic metabolic pathway Smith-Lemli-Opitz Syndrome pathway
Disease Ontology: Niemann-Pick disease type A Niemann-Pick disease type B Niemann-Pick disease type C1 Smith-Lemli-Opitz syndrome Niemann-Pick disease type C2
Participants
Label | Type | Compact Identifier | Comment |
---|---|---|---|
7-Dehydrocholesterol | Metabolite | inchikey:UCTLRSWJYQTBFZ-DDPQNLDTSA-N | aka 7-DHCabundant in SLOS. |
3b,5a,6b-Trihydroxycholan-24-oyl-glycine | Metabolite | inchikey:PVXZQUUYXFMXMF-ABSIFXOISA-N | |
3b,7b-Dihydroxychol-5-en-24-oic acid | Metabolite | inchikey:PXHCARRJGFGPAC-SZQOYVLDSA-N | |
Cholesterol | Metabolite | inchikey:HVYWMOMLDIMFJA-DPAQBDIFSA-N | |
7b-Hydroxycholesterol | Metabolite | inchikey:OYXZMSRRJOYLLO-KGZHIOMZSA-N | |
(25R)26-Hydroxy-7-oxocholesterol | Metabolite | inchikey:LFNAJBFFWWMSEW-HNFKANRHSA-N | |
Dendrogenin A | Metabolite | inchikey:AVFNYTPENXWWCA-BULFVYHESA-N | |
Cholestane-3b,5a,6b,(25R)26-tetrol | Metabolite | inchikey:PFYSRSDOSXYIFG-JKYVJSSTSA-N | |
3b,5a,6b-Trihydroxycholestan-(25R)26-oic acid | Metabolite | inchikey:LMWUOMGULHFSQR-HDEGCWFHSA-N | |
3b-Hydroxy-7-oxochol-5-en-24-oyl-CoA | Metabolite | inchikey:HEPNPBUPTRNGJT-ILFWFKRZSA-N | |
Cholestane-3b,5a,6b-triol | Metabolite | inchikey:YMMFNKXZULYSOQ-RUXQDQFYSA-N | |
7-Oxocholesterol | Metabolite | inchikey:YIKKMWSQVKJCOP-ABXCMAEBSA-N | aka 7-OCElevated levels found in Wolman's disease |
3b,7b-Dihydroxychol-5-en-24-oyl-glycine | Metabolite | inchikey:BMRAURDLHOPSBE-FRMRTHFDSA-N | |
7b-Peroxycholesterol | Metabolite | inchikey:KJIGLXGIVLBXCF-UOQFGJKXSA-N | |
3b-Hydroxy-7-oxocholest-5-en-(25R)26-oic acid | Metabolite | inchikey:QOEPZHFZXUROGV-BXDHRDAUSA-N | |
3b-Hydroxy-7-oxochol-5-en-24-oic acid | Metabolite | inchikey:JHFXTNJNQOZGEJ-HICUSVRDSA-N | |
3b,5a,6b-Trihydroxycholan-24-oic acid | Metabolite | inchikey:NMKAZCXSXYNCFW-DWQVTILUSA-N | |
3b-Hydroxy-7-oxochol-5-en-24-oyl-glycine | Metabolite | inchikey:AXBXXYALPXTOOI-UBKHJBOVSA-N | |
3b,5a-DiH-cholestan-6-one | Metabolite | inchikey:SJZZRXMQSAXCFD-FRAMIZMOSA-N | aka 3b,5a-Dihydroxycholestan-6-one |
3b,7b-Dihydroxycholest-5-en-(25R)26-oic acid | Metabolite | inchikey:GYJSAWZGYQXRBS-WMYDBBFWSA-N | |
3b,5a,6b-Trihydroxycholan-24-oyl-CoA | Metabolite | inchikey:WRWBXZATSFAUGF-UJKOPXFNSA-N | |
3b,7b-Dihydroxychol-5-en-24-oyl-CoA | Metabolite | inchikey:XRRIYAPQOCXHCP-NRNJIOKESA-N | |
3b,24R-Dihydroxy-7-oxocholest-5-en-(25R)26-oyl-CoA | Metabolite | inchikey:UOHZUNSDJHLARD-JLLVOJIKSA-N | |
3b,5a,6b,24R-Tetrahydroxycholestan-(25R)26-oyl-CoA | Metabolite | inchikey:PJJHUKDTGITXML-MFOUGJSISA-N | |
5,6-Epoxycholesterol | Metabolite | inchikey:PRYIJAGAEJZDBO-XXGHXXDPSA-N | |
7b,(25R)26-Dihydroxycholesterol | Metabolite | inchikey:RXMHNAKZMGJANZ-BMOLSTJGSA-N | |
3b,7b,24R-Trihydroxycholest-5-en-(25R)26-oyl-CoA | Metabolite | inchikey:BZALPCSTIFZGTP-YBYDULIXSA-N | |
Cholesterol | Metabolite | inchikey:HVYWMOMLDIMFJA-DPAQBDIFSA-N | |
Cholesterol | Metabolite | inchikey:HVYWMOMLDIMFJA-DPAQBDIFSA-N | |
CYP7A1 | GeneProduct | hgnc.symbol:CYP7A1 | |
NPC1 | GeneProduct | hgnc.symbol:NPC1 | |
HSD11B1 | GeneProduct | hgnc.symbol:HSD11B1 | |
HSD11B2 | GeneProduct | hgnc.symbol:HSD11B2 | |
CYP27A1 | GeneProduct | hgnc.symbol:CYP27A1 | |
BACS (SLC27A5) | GeneProduct | hgnc.symbol:SLC27A5 | Bile Acid CoA ligase (or synthetase)microsomal protein mostly expressed in liver [PMID:24309898, 25409824(mouse)] |
VLCS (SLC27A2) | GeneProduct | hgnc.symbol:SLC27A2 | very-long chain acyl-CoA synthetaseexpressed mostly in liver and kidney, and present in ER and peroxisome [PMID:24309898, 25409824(mouse)] |
AMACR | GeneProduct | hgnc.symbol:AMACR | alpha-methylacyl-CoA racemasebroadly expressed [PMID:24309898, 25409824(mouse)] |
ACOX2 | GeneProduct | hgnc.symbol:ACOX2 | |
DBP | GeneProduct | hgnc.symbol:DBP | D-biofinctional protein; aka MFE2, HSD17B4 |
SCPx (SCP2) | GeneProduct | hgnc.symbol:SCP2 | |
DBP | GeneProduct | hgnc.symbol:DBP | D-biofinctional protein; aka MFE2, HSD17B4 |
BAAT | GeneProduct | hgnc.symbol:BAAT | amino acid N-acyl transferase |
CYP27A1 | GeneProduct | hgnc.symbol:CYP27A1 | |
BACS (SLC27A5) | GeneProduct | hgnc.symbol:SLC27A5 | Bile Acid CoA ligase (or synthetase)microsomal protein mostly expressed in liver [PMID:24309898, 25409824(mouse)] |
VLCS (SLC27A2) | GeneProduct | hgnc.symbol:SLC27A2 | very-long chain acyl-CoA synthetaseexpressed mostly in liver and kidney, and present in ER and peroxisome [PMID:24309898, 25409824(mouse)] |
AMACR | GeneProduct | hgnc.symbol:AMACR | alpha-methylacyl-CoA racemasebroadly expressed [PMID:24309898, 25409824(mouse)] |
ACOX2 | GeneProduct | hgnc.symbol:ACOX2 | |
DBP | GeneProduct | hgnc.symbol:DBP | D-biofinctional protein; aka MFE2, HSD17B4 |
SCPx (SCP2) | GeneProduct | hgnc.symbol:SCP2 | |
DBP | GeneProduct | hgnc.symbol:DBP | D-biofinctional protein; aka MFE2, HSD17B4 |
BAAT | GeneProduct | hgnc.symbol:BAAT | amino acid N-acyl transferase |
HSD11B2 | GeneProduct | hgnc.symbol:HSD11B2 | |
HSD11B1 | GeneProduct | hgnc.symbol:HSD11B1 | |
HSD11B2 | GeneProduct | hgnc.symbol:HSD11B2 | |
HSD11B1 | GeneProduct | hgnc.symbol:HSD11B1 | |
HSD11B2 | GeneProduct | hgnc.symbol:HSD11B2 | |
NPC2 | GeneProduct | hgnc.symbol:NPC2 | |
ACOT1 | Protein | uniprot:Q86TX2 | |
ACOT | Protein | eccode:3.1.2.2 | acyl-CoA thioesterase are a group of enzymes |
ACOT2 | Protein | uniprot:P49753 | 'originally thought to be in peroxisome [PMID:10944470)], later found to be mitochondrial [PMID:16940157]' [https://www.uniprot.org/uniprot/P49753] |
ACOT4 | Protein | uniprot:Q8N9L9 | 'Compared to mouse peroxisomal succinyl-coenzyme A thioesterase/ACOT4, the human enzyme has a broad substrate specificity overlapping the activity of three mouse acyl-coenzyme A thioesterases, providing an explanation for the unexpectedly low number of acyl-coenzyme A thioesterase genes in the human genome [PMID:16940157]' [https://www.uniprot.org/uniprot/Q8N9L9] |
ACOT6 | Protein | uniprot:Q3I5F7 | |
ACOT7 | Protein | uniprot:O00154 | |
ACOT8 | Protein | uniprot:O14734 | |
ACOT9 | Protein | uniprot:Q9Y305 | |
ACOT11 | Protein | uniprot:Q8WXI4 | |
ACOT12 | Protein | uniprot:Q8WYK0 | |
ACOT13 | Protein | uniprot:Q9NPJ3 | |
ACOT7L | Protein | uniprot:Q6ZUV0 | 'Could be the product of a pseudogene. The peptide used to produce antibodies against ACOT7L matches at 85% with ACOT7 and the antibodies may not be specific to ACOT7L.' [https://www.uniprot.org/uniprot/Q6ZUV0] |
ACOT15 | Protein | uniprot:Q8N1Q8 | |
ChEH | Protein | uniprot:P34913 | AKA cholesterol epoxide hydrolase (ChEH); EC: 3.3.2.11'ChEH is a dimer of 7-dehydrocholesterol reductase (DHCR7) and 3β-hydroxysteroid-Δ8-Δ7-isomerase (D8D7I)' |
ACOT1 | Protein | uniprot:Q86TX2 | |
ACOT | Protein | eccode:3.1.2.2 | acyl-CoA thioesterase are a group of enzymes |
ACOT2 | Protein | uniprot:P49753 | 'originally thought to be in peroxisome [PMID:10944470)], later found to be mitochondrial [PMID:16940157]' [https://www.uniprot.org/uniprot/P49753] |
ACOT4 | Protein | uniprot:Q8N9L9 | 'Compared to mouse peroxisomal succinyl-coenzyme A thioesterase/ACOT4, the human enzyme has a broad substrate specificity overlapping the activity of three mouse acyl-coenzyme A thioesterases, providing an explanation for the unexpectedly low number of acyl-coenzyme A thioesterase genes in the human genome [PMID:16940157]' [https://www.uniprot.org/uniprot/Q8N9L9] |
ACOT6 | Protein | uniprot:Q3I5F7 | |
ACOT7 | Protein | uniprot:O00154 | |
ACOT8 | Protein | uniprot:O14734 | |
ACOT9 | Protein | uniprot:Q9Y305 | |
ACOT11 | Protein | uniprot:Q8WXI4 | |
ACOT12 | Protein | uniprot:Q8WYK0 | |
ACOT13 | Protein | uniprot:Q9NPJ3 | |
ACOT7L | Protein | uniprot:Q6ZUV0 | 'Could be the product of a pseudogene. The peptide used to produce antibodies against ACOT7L matches at 85% with ACOT7 and the antibodies may not be specific to ACOT7L.' [https://www.uniprot.org/uniprot/Q6ZUV0] |
ACOT15 | Protein | uniprot:Q8N1Q8 | |
DHCR7 | Protein | uniprot:Q9UBM7 | 'ChEH is a dimer of 7-dehydrocholesterol reductase (DHCR7) and 3β-hydroxysteroid-Δ8-Δ7-isomerase (D8D7I)'the 3beta-hydroxysteroid delta7 reductase (DHCR7), which is the regulatory subunit. [https://en.wikipedia.org/wiki/Cholesterol-5,6-oxide_hydrolase] |
D8D7I | Protein | uniprot:Q15125 | 'ChEH is a dimer of 7-dehydrocholesterol reductase (DHCR7) and 3β-hydroxysteroid-Δ8-Δ7-isomerase (D8D7I)'also known as the emopamyl binding protein (EBP), which is the catalytic subunit [https://en.wikipedia.org/wiki/Cholesterol-5,6-oxide_hydrolase] |
References
- Jones JM, Gould SJ. Identification of PTE2, a human peroxisomal long-chain acyl-CoA thioesterase. Biochem Biophys Res Commun. 2000 Aug 18;275(1):233–40. PubMed Europe PMC Scholia
- Schweizer RAS, Zürcher M, Balazs Z, Dick B, Odermatt A. Rapid hepatic metabolism of 7-ketocholesterol by 11beta-hydroxysteroid dehydrogenase type 1: species-specific differences between the rat, human, and hamster enzyme. J Biol Chem. 2004 Apr 30;279(18):18415–24. PubMed Europe PMC Scholia
- Hult M, Elleby B, Shafqat N, Svensson S, Rane A, Jörnvall H, et al. Human and rodent type 1 11beta-hydroxysteroid dehydrogenases are 7beta-hydroxycholesterol dehydrogenases involved in oxysterol metabolism. Cell Mol Life Sci. 2004 Apr;61(7–8):992–9. PubMed Europe PMC Scholia
- Hunt MC, Rautanen A, Westin MAK, Svensson LT, Alexson SEH. Analysis of the mouse and human acyl-CoA thioesterase (ACOT) gene clusters shows that convergent, functional evolution results in a reduced number of human peroxisomal ACOTs. FASEB J. 2006 Sep;20(11):1855–64. PubMed Europe PMC Scholia
- de Medina P, Paillasse MR, Segala G, Poirot M, Silvente-Poirot S. Identification and pharmacological characterization of cholesterol-5,6-epoxide hydrolase as a target for tamoxifen and AEBS ligands. Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13520–5. PubMed Europe PMC Scholia
- Porter FD, Scherrer DE, Lanier MH, Langmade SJ, Molugu V, Gale SE, et al. Cholesterol oxidation products are sensitive and specific blood-based biomarkers for Niemann-Pick C1 disease. Sci Transl Med. 2010 Nov 3;2(56):56ra81. PubMed Europe PMC Scholia
- Clayton PT. Disorders of bile acid synthesis. J Inherit Metab Dis. 2011 Jun;34(3):593–604. PubMed Europe PMC Scholia
- Shinkyo R, Xu L, Tallman KA, Cheng Q, Porter NA, Guengerich FP. Conversion of 7-dehydrocholesterol to 7-ketocholesterol is catalyzed by human cytochrome P450 7A1 and occurs by direct oxidation without an epoxide intermediate. J Biol Chem. 2011 Sep 23;286(38):33021–8. PubMed Europe PMC Scholia
- Shackleton CHL. Role of a disordered steroid metabolome in the elucidation of sterol and steroid biosynthesis. Lipids. 2012 Jan;47(1):1–12. PubMed Europe PMC Scholia
- Mitić T, Shave S, Semjonous N, McNae I, Cobice DF, Lavery GG, et al. 11β-Hydroxysteroid dehydrogenase type 1 contributes to the balance between 7-keto- and 7-hydroxy-oxysterols in vivo. Biochem Pharmacol. 2013 Jul 1;86(1):146–53. PubMed Europe PMC Scholia
- de Medina P, Paillasse MR, Segala G, Voisin M, Mhamdi L, Dalenc F, et al. Dendrogenin A arises from cholesterol and histamine metabolism and shows cell differentiation and anti-tumour properties. Nat Commun. 2013;4:1840. PubMed Europe PMC Scholia
- Fagerberg L, Hallström BM, Oksvold P, Kampf C, Djureinovic D, Odeberg J, et al. Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics. Mol Cell Proteomics. 2014 Feb;13(2):397–406. PubMed Europe PMC Scholia
- Vance JE, Karten B. Niemann-Pick C disease and mobilization of lysosomal cholesterol by cyclodextrin. J Lipid Res. 2014 Aug;55(8):1609–21. PubMed Europe PMC Scholia
- Klinke G, Rohrbach M, Giugliani R, Burda P, Baumgartner MR, Tran C, et al. LC-MS/MS based assay and reference intervals in children and adolescents for oxysterols elevated in Niemann-Pick diseases. Clin Biochem. 2015 Jun;48(9):596–602. PubMed Europe PMC Scholia
- Raleigh DR, Sever N, Choksi PK, Sigg MA, Hines KM, Thompson BM, et al. Cilia-Associated Oxysterols Activate Smoothened. Mol Cell. 2018 Oct 18;72(2):316-327.e5. PubMed Europe PMC Scholia
- Griffiths WJ, Wang Y. Oxysterols as lipid mediators: Their biosynthetic genes, enzymes and metabolites. Prostaglandins Other Lipid Mediat. 2020 Apr;147:106381. PubMed Europe PMC Scholia