Serine metabolism (WP4688)
Homo sapiens
This pathway shows disorders related to serine metabolism. Disorders resulting from an enzyme defect are highlighted in pink. This pathway was inspired by Chapter 5 (ed. 4) from the book of Blau (ISBN 3642403360 (978-3642403361)), Fig. 5.2.
Authors
Amy Kutmon , Denise Slenter , Kristina Hanspers , Yasmin Omar , Egon Willighagen , Eric Weitz , Friederike Ehrhart , and Finterly HuCited In
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Organism
Homo sapiensCommunities
Inborn Errors of Metabolism (IEM) Pathways Lipids and LIPID MAPS Rare DiseasesAnnotations
Disease Ontology: PSPH deficiency PHGDH deficiency PSAT deficiency inherited metabolic disorder
Pathway Ontology: serine metabolic pathway
Participants
Label | Type | Compact Identifier | Comment |
---|---|---|---|
D-serine | Metabolite | chebi:35247 | |
3-Phosphoserine | Metabolite | chebi:57524 | |
Mg2+ | Metabolite | chebi:18420 | |
NAD+ | Metabolite | chebi:15846 | |
(2R)-3-phosphoglycerate | Metabolite | chebi:58272 | |
Phosphatidylserine | Metabolite | chebi:18303 | |
PLP | Metabolite | chebi:18405 | |
Glycine | Metabolite | chebi:57305 | |
Methylene-THF | Metabolite | chebi:15636 | |
pyruvate | Metabolite | chebi:15361 | |
glucose | Metabolite | chebi:17234 | |
H+ | Metabolite | chebi:15378 | |
D-Glyceraldehyde 3-phosphate | Metabolite | chebi:29052 | |
3-Phosphohydroxypyruvate | Metabolite | chebi:18110 | |
L-serine | Metabolite | chebi:33384 | |
NADH | Metabolite | chebi:57945 | |
glutamate | Metabolite | chebi:29985 | |
2-Ketoglutarate | Metabolite | chebi:16810 | |
H2O | Metabolite | chebi:15377 | |
Pi | Metabolite | chebi:43474 | |
dTMP | Metabolite | chebi:63528 | |
dUMP | Metabolite | chebi:246422 | |
DHF | Metabolite | chebi:57451 | aka 7,8-dihydrofolate |
THF | Metabolite | chebi:57453 | |
sphingolipids | Metabolite | chebi:26739 | |
ceramides | Metabolite | chebi:17761 | |
PHGDH | Protein | uniprot:O43175 | |
TYMS | Protein | uniprot:P04818 | |
SHMT1 | Protein | uniprot:P34896 | serine hydroxymethyltransferase 1, cytosolic |
SR | Protein | uniprot:Q9GZT4 | Serine racemase |
PSAT1 | Protein | uniprot:Q9Y617 | |
SHMT2 | Protein | uniprot:P34897 | serine hydroxymethyltransferase 2; mitochondrial |
DHFR | Protein | uniprot:P00374 | |
PSPH | Protein | uniprot:P78330 |
References
- Blau N, Duran M, Gibson KM, Dionisi-Vici C. Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases [Internet]. Springer; 2014. 867 p. Available from: https://books.google.com/books/about/Physician_s_Guide_to_the_Diagnosis_Treat.html?hl=&id=wJRBnwEACAAJ OpenLibrary Worldcat
- Foltyn VN, Bendikov I, De Miranda J, Panizzutti R, Dumin E, Shleper M, et al. Serine racemase modulates intracellular D-serine levels through an alpha,beta-elimination activity. J Biol Chem. 2005 Jan 21;280(3):1754–63. PubMed Europe PMC Scholia
- Fan J, Teng X, Liu L, Mattaini KR, Looper RE, Vander Heiden MG, et al. Human phosphoglycerate dehydrogenase produces the oncometabolite D-2-hydroxyglutarate. ACS Chem Biol. 2015 Feb 20;10(2):510–6. PubMed Europe PMC Scholia