Cerebral organic acidurias, including diseases (WP4519)

Homo sapiens

This pathway shows disorders related to the accumulation of organic acids in body fluids, resulting in cerebral organic acidurias. Symptoms often include mental or motor retardation, difficulties while moving and epilepsy. For all but one disorder, current treatment options have been proven ineffective. Disorders resulting from an enzyme defect are highlighted in pink. This pathway was inspired by Chapter 8 of the book of Blau (ISBN 3642403360 (978-3642403361)).
last edited

Authors

Britt Pieters , Denise Slenter , Eveline Schoenmaker , Irene Hemel , Egon Willighagen , Friederike Ehrhart , Eric Weitz , and Finterly Hu

Cited In

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Organism

Homo sapiens

Communities

Inborn Errors of Metabolism (IEM) Pathways Rare Diseases

Annotations

Disease Ontology: D-2-hydroxyglutaric aciduria organic acidemia Canavan disease 2-hydroxyglutaric aciduria

Pathway Ontology: lysine degradation pathway disease pathway glutaric aciduria type I pathway

Participants

Label Type Compact Identifier Comment
hydroxylysine Metabolite chebi:60175
Tryptophan Metabolite chebi:16828
Glutaric acid Metabolite chebi:17859
Glutaconyl coenzyme A Metabolite chebi:57353 AKA trans-4-carboxybut-2-enoyl-CoA
3-Hydroxyglutaric acid Metabolite chebi:39980
FAD Metabolite chebi:16238
NADPH Metabolite chebi:16474
Acetyl coenzyme A Metabolite chebi:15351
glutaryl-coenzyme A Metabolite chebi:15524
L-2-Aminoadipic acid Metabolite chebi:37024
FADH2 Metabolite chebi:17877
Glutaconic acid Metabolite chebi:24309
NADPH+ Metabolite hmdb:HMDB0000221
L-2-Hydroxyglutaric acid Metabolite hmdb:HMDB0000694
NADH Metabolite chebi:16908
2-Oxoadipic acid Metabolite chebi:15753
L-N-Acetylaspartate Metabolite chebi:21547
H+ Metabolite chebi:15378
Aspartate Metabolite chebi:17053
Coenzyme A Metabolite chebi:15346
lysine Metabolite chebi:25094
2-Ketoglutaric acid Metabolite chebi:30915 AKA 2-ketoglutarate, 2-oxoglutarate, 2-oxopentanedioic acid, α-ketoglutarate
Crotonyl CoA Metabolite chebi:57332 AKA (E)-but-2-enoyl-CoA
NAD+ Metabolite chebi:15846
D-2-Hydroxyglutaric acid Metabolite chebi:15801
2-aminoadipic semialdehyde Metabolite chebi:61515
Aspartate Metabolite chebi:17053
Acetyl coenzyme A Metabolite chebi:15351
glutarylcarnitine Metabolite chebi:73040
3-hydroxyglutaryl CoA Metabolite pubchem.compound:445127
Antiquitin Protein ensembl:ENSG00000164904
IDH2 Protein ensembl:ENSG00000182054
D-2-hydroxyglutarate dehydrogenase Protein uniprot:Q8N465
L2HGDH Protein ensembl:ENSG00000087299
L-malDH Protein uniprot:A0A024R4K3
Hydroxyacid-oxoacid transhydrogenase Protein uniprot:B4DFI7
Aminoacylase-2 Protein uniprot:A0A1B0GTG3 Aka ACY1
Glutaryl-CoA dehydrogenase Protein uniprot:Q92947

References

  1. Blau N, Duran M, Gibson KM, Dionisi-Vici C. Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases [Internet]. Springer; 2014. 867 p. Available from: https://books.google.com/books/about/Physician_s_Guide_to_the_Diagnosis_Treat.html?hl=&id=wJRBnwEACAAJ OpenLibrary Worldcat
  2. Kvittingen EA, Guldal G, Børsting S, Skalpe IO, Stokke O, Jellum E. N-acetylaspartic aciduria in a child with a progressive cerebral atrophy. Clin Chim Acta. 1986 Aug 15;158(3):217–27. PubMed Europe PMC Scholia
  3. Chalmers RA, Lawson AM, Watts RW, Tavill AS, Kamerling JP, Hey E, et al. D-2-hydroxyglutaric aciduria: case report and biochemical studies. J Inherit Metab Dis. 1980;3(1):11–5. PubMed Europe PMC Scholia
  4. Hoffmann GF, Böhles HJ, Burlina A, Duran M, Herwig J, Lehnert W, et al. Early signs and course of disease of glutaryl-CoA dehydrogenase deficiency. J Inherit Metab Dis. 1995;18(2):173–6. PubMed Europe PMC Scholia
  5. BANKER BQ, ROBERTSON JT, VICTOR M. SPONGY DEGENERATION OF THE CENTRAL NERVOUS SYSTEM IN INFANCY. Neurology. 1964 Nov;14:981–1001. PubMed Europe PMC Scholia
  6. Rzem R, Van Schaftingen E, Veiga-da-Cunha M. The gene mutated in l-2-hydroxyglutaric aciduria encodes l-2-hydroxyglutarate dehydrogenase. Biochimie. 2006 Jan;88(1):113–6. PubMed Europe PMC Scholia
  7. Hedlund GL, Longo N, Pasquali M. Glutaric acidemia type 1. Am J Med Genet C Semin Med Genet. 2006 May 15;142C(2):86–94. PubMed Europe PMC Scholia
  8. Arun P, Moffett JR, Namboodiri AMA. Evidence for mitochondrial and cytoplasmic N-acetylaspartate synthesis in SH-SY5Y neuroblastoma cells. Neurochem Int. 2009 Sep;55(4):219–25. PubMed Europe PMC Scholia
  9. Kranendijk M, Struys EA, van Schaftingen E, Gibson KM, Kanhai WA, van der Knaap MS, et al. IDH2 mutations in patients with D-2-hydroxyglutaric aciduria. Science. 2010 Oct 15;330(6002):336. PubMed Europe PMC Scholia