Disorders of folate metabolism and transport (WP4259)
Homo sapiens
Folates play an essential role in one-carbon methyl transfer reactions, mediating several biological processes (e.g. DNA synthesis, epigentics by methylation, embryonic central nervous system development, cata-/anabolism of amino acids, and anabolism of thymidines, purines, and neurotransmitters. The biologically active folic acid derivative is 5,6,7,8-tetrahydrofolate (THF). Dietary folate is absorbed in the intestine, and stored in the liver for few months. [rephrased from chapter 10 of Blau et al, ISBN 3642403360 (978-3642403361)]. For more detail on MTHFR deficiency, please visit [https://www.wikipathways.org/index.php/Pathway:WP4288].
Authors
Jesse Vercoulen , Egon Willighagen , Andra Waagmeester , Denise Slenter , Kristina Hanspers , Irene Hemel , Josien Landman , Friederike Ehrhart , Eric Weitz , and Finterly HuCited In
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Organism
Homo sapiensCommunities
Diseases Inherited Metabolic Disorders (IMD) Pathways Rare DiseasesAnnotations
Pathway Ontology: folate metabolic pathway disease pathway methylenetetrahydrofolate reductase deficiency pathway
Disease Ontology: vitamin B12 deficiency vitamin metabolic disorder cerebral folate receptor alpha deficiency glutamate formiminotransferase deficiency megaloblastic anemia
Cell Type Ontology: central nervous system neuron
Participants
Label | Type | Compact Identifier | Comment |
---|---|---|---|
SAM | Metabolite | chebi:67040 | |
serine | Metabolite | chebi:17822 | |
THF | Metabolite | chebi:20506 | |
5-Methyl-THF | Metabolite | chebi:15641 | |
NH4+ | Metabolite | chebi:28938 | |
L-glutamic acid | Metabolite | chebi:16015 | |
SAH | Metabolite | chebi:16680 | |
CO2 | Metabolite | chebi:16526 | |
glycine | Metabolite | chebi:15428 | |
N-formimidoyl-L-glutamate | Metabolite | chebi:58928 | Based on Rhea, the side metabolite is not Histidine |
Homocysteine | Metabolite | chebi:17230 | |
DHF | Metabolite | chebi:15633 | AKA 7,8-DHF |
Methionine | Metabolite | chebi:16643 | |
Folic acid | Metabolite | chebi:27470 | |
5,10-Methylene-THF | Metabolite | chebi:1989 | |
Vitamin B12 | Metabolite | chebi:30411 | |
5-formimino-THF | Metabolite | chebi:15639 | |
5,10-Methenyl-THF | Metabolite | chebi:15638 | |
GAR | Metabolite | chebi:18349 | |
Formyl-GAR | Metabolite | chebi:18272 | |
AICAR | Metabolite | chebi:2030 | |
FAICAR | Metabolite | chebi:18381 | |
10-Formyl-THF | Metabolite | chebi:15637 | |
5-Formyl-THF | Metabolite | chebi:15640 | |
dTMP | Metabolite | chebi:17013 | |
dUMP | Metabolite | chebi:17622 | |
Folic acid | Metabolite | chebi:27470 | |
THF | Metabolite | chebi:20506 | |
5-Methyl-THF | Metabolite | chebi:15641 | |
qDHF | Metabolite | inchikey:AIZSNLNTIFEHJG-KIYNQFGBSA-N | AKA quinoid DHF; SMILES: Nc1-n=C2NCC(CNc3ccc(cc3)C(=O)N[[email protected]@H](CCC(O)=O)C(O)=O)N=c2C(=O)N=1 |
7.8-dihydropterin | Metabolite | chebi:64277 | Reference [PMID:30587505] does not provide info on stereochemistry |
iminium ion | Metabolite | chebi:35286 | |
formaldehyde | Metabolite | chebi:1684 | |
MTHFD1 | Protein | uniprot:P11586 | Found based on EC code for MTHFCH, information in UniProt describes this reaction. |
QDPR | Protein | uniprot:P09417 | |
MTHFD1 | Protein | uniprot:P11586 | |
SHMT1 | Protein | uniprot:P34896 | |
GARTF | Protein | uniprot:C9JKQ7 | |
MTHFS | Protein | ensembl:ENSG00000136371 | |
MTHFCH | Protein | eccode:3.5.4.9 | MTHFCH: methenyl-THF cyclohydrolase |
SLC46A1 | Protein | uniprot:Q96NT5 | AKA PCFT |
FOLR1 | Protein | uniprot:P15328 | AKA Folate receptor alpha |
AICART | Protein | uniprot:P31939 | AKA ATIC, PURH |
TS | Protein | uniprot:P04818 | AKA TYMS |
ALDH1L1 | Protein | uniprot:O75891 | AKA FTHFD, cytosolic |
MS | Protein | uniprot:Q99707 | |
SHMT | Protein | uniprot:P34897 | AKA SHMT2; Rhea and UniProt confirm the '2' addition, whereas the Blau book chapter only mentions SHMT. |
FTCD | Protein | uniprot:O95954 | AKA FITHFCH |
DHFR | Protein | uniprot:B0YJ76 | |
MTHFR | Protein | uniprot:P42898 | |
MTHFD1 | Protein | uniprot:P11586 | |
SHMT1 | Protein | uniprot:P34896 | |
SLC19A1 | Protein | uniprot:P41440 | AKA Folate receptor alpha |
ALDH1L2 | Protein | uniprot:Q3SY69 | AKA FTHFD, mitochondrial |
MTHFD2 | Protein | uniprot:P13995 | Found based on EC code for MTHFCH, information in UniProt describes this reaction. |
MTHFD2L | Protein | uniprot:Q9H903 | Found based on EC code for MTHFCH, information in UniProt describes this reaction. |
References
- Blau N, Duran M, Gibson KM, Dionisi-Vici C. Physician’s Guide to the Diagnosis, Treatment, and Follow-Up of Inherited Metabolic Diseases [Internet]. Springer; 2014. 867 p. Available from: https://books.google.com/books/about/Physician_s_Guide_to_the_Diagnosis_Treat.html?hl=&id=wJRBnwEACAAJ OpenLibrary Worldcat
- Toward a better understanding of folate metabolism in health and disease. Zheng Y, Cantley LC. J Exp Med. 2019 Feb 4;216(2):253–66. PubMed Europe PMC Scholia