Purine metabolism and related disorders (WP4224)
Homo sapiens
Authors
Roel Hacking , Egon Willighagen , Denise Slenter , Martina Summer-Kutmon , Daniela Digles , Irene Hemel , Josien Landman , Kristina Hanspers , Finterly Hu , and Friederike EhrhartCited In
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Organism
Homo sapiensCommunities
Inherited Metabolic Disorders (IMD) Pathways Rare DiseasesAnnotations
Disease Ontology: Lesch-Nyhan syndrome adenylosuccinase lyase deficiency adenosine deaminase deficiency mitochondrial DNA depletion syndrome 3 adenine phosphoribosyltransferase deficiency
Pathway Ontology: inborn error of purine-pyrimidine metabolism pathway purine nucleoside phosphorylase deficiency pathway adenosine monophosphate deaminase deficiency pathway Lesch-Nyhan syndrome pathway disease pathway purine metabolic pathway xanthinuria type II pathway
Participants
Label | Type | Compact Identifier | Comment |
---|---|---|---|
Moco | Metabolite | chebi:82685 | molybdenum, cofactor for XDH and ADO enzymes |
PRPP | Metabolite | chebi:17111 | |
ATP | Metabolite | chebi:30616 | |
XMP | Metabolite | chebi:57464 | |
Moco | Metabolite | chebi:82685 | molybdenum, cofactor for XDH and ADO enzymes |
Methionine | Metabolite | chebi:57844 | |
SAICARP | Metabolite | chebi:58443 | |
Mg2+ | Metabolite | wikidata:Q26987404 | Metal Ion |
AICA-riboside | Metabolite | chebi:28498 | |
6-oxopyrimidine (M1) | Metabolite | inchikey:ORGWVAZZJZJVPV-UHFFFAOYSA-N | Oxidize version of auglurant, N-(5-fluoropyridin-2-yl)-6-methyl-4-((6-oxo)1,6-dihydropyrimidin-5-yloxy)picolinamide, aka VU0652922; structure drawn based on Fig. 1 [PMID:28939686] |
5-PRA | Metabolite | chebi:58681 | ChEBI for 5-phospho-β-D-ribosylamine that is used in the conversion from 5-PRA to GAR. The ChEBI for 5-PRA in the conversion from PRPP to 5-PRA is 58089 (5-phospho-D-ribosylamine)Type your comment here |
AMP | Metabolite | chebi:456215 | |
Xanthosine | Metabolite | chebi:18107 | |
2'-Deoxyadenosine | Metabolite | chebi:17256 | |
Inosine | Metabolite | chebi:17596 | |
GDP | Metabolite | chebi:58189 | |
Ribose-5-P | Metabolite | chebi:52742 | |
6-methylthiopurine | Metabolite | chebi:28279 | |
SAICA-riboside | Metabolite | chebi:18319 | |
dGDP | Metabolite | chebi:58595 | |
Succinyladenosine | Metabolite | chebi:71169 | |
dATP | Metabolite | chebi:61404 | |
ATP | Metabolite | wikidata:Q80863 | Co-enzyme |
AICARP | Metabolite | chebi:58475 | |
2,8-Dihydroxyadenine | Metabolite | wikidata:Q4596812 | |
dADP | Metabolite | chebi:57667 | |
Adenosine | Metabolite | chebi:16335 | |
dAMP | Metabolite | chebi:58245 | |
Gln | Metabolite | wikidata:Q181619 | Substrate |
ITP | Metabolite | chebi:61402 | is a nucleoside triphosphate(4−) |
Hypoxanthine | Metabolite | chebi:17368 | |
Guanosine | Metabolite | chebi:16750 | |
auglurant | Metabolite | inchikey:RBAHIIPVJVMACF-UHFFFAOYSA-N | VU0424238 (VU238, auglurant) aka N-(5-fluoropyridin-2-yl)-6-methyl-4-(pyrimidin-5-yloxy)picolinamide |
SAM | Metabolite | chebi:59789 | aka S-adenosyl-L-methionine |
S-AMP | Metabolite | chebi:57567 | succinyladenosine monophosphate |
H2O | Metabolite | chebi:15377 | Inorganic molecules |
Xanthine | Metabolite | chebi:17712 | |
ADP | Metabolite | chebi:456216 | |
GTP | Metabolite | chebi:37565 | |
dGTP | Metabolite | chebi:16497 | |
Mercaptopurine | Metabolite | chebi:50667 | |
Urate | Metabolite | chebi:17775 | |
Moco (inactive) | Metabolite | chebi:171302 | 'In addition to the dithiolene sulfurs of the pterin moiety and two oxo groups, the molybdenum atom of Moco needs the addition of a terminal inorganic sulfur to provide enzyme activity to these enzymes (55). This final step is catalyzed by the Moco sulfurase protein (ABA3 in plants and HMCS in humans) ' [PMID:23539623]. HMCS is an alternative name for MOCOS (in UniProt, https://www.uniprot.org/uniprotkb/Q96EN8/entry) |
Adenine | Metabolite | chebi:16708 | |
Guanine | Metabolite | chebi:16235 | |
dGMP | Metabolite | chebi:57673 | |
FAICARP | Metabolite | chebi:58467 | |
2-Deoxyguanosine | Metabolite | chebi:17172 | |
GMP | Metabolite | chebi:58115 | |
2'-deoxyinosine | Metabolite | chebi:28997 | |
IMP | Metabolite | chebi:58053 | |
PRPP | Metabolite | chebi:58017 | |
GAR | Metabolite | chebi:58457 | ChEBI identifier will be replaced and updated by RHEA end of July |
FGAR | Metabolite | chebi:58426 | |
FGAM | Metabolite | chebi:58478 | |
AIR | Metabolite | chebi:137981 | |
CAIR | Metabolite | chebi:77657 | |
AICARP | Metabolite | chebi:58475 | |
SACAIR | Metabolite | chebi:58443 | |
ADP | Metabolite | wikidata:Q185253 | Co-enzyme |
ATP | Metabolite | wikidata:Q80863 | Co-enzyme |
ADP | Metabolite | wikidata:Q185253 | Co-enzyme |
ATP | Metabolite | wikidata:Q80863 | Co-enzyme |
ADP | Metabolite | wikidata:Q185253 | Co-enzyme |
ATP | Metabolite | wikidata:Q80863 | Co-enzyme |
ADP | Metabolite | wikidata:Q185253 | Co-enzyme |
ATP | Metabolite | wikidata:Q80863 | Co-enzyme |
ADP | Metabolite | wikidata:Q185253 | Co-enzyme |
Glu | Metabolite | chebi:16015 | Substrate |
P(i) | Metabolite | wikidata:Q177811 | Inorganic molecules |
Mg2+ | Metabolite | wikidata:Q26987404 | Metal Ion |
P(i) | Metabolite | wikidata:Q177811 | Inorganic molecules |
Gln | Metabolite | wikidata:Q181619 | Substrate |
N(10)-formyl-THF | Metabolite | wikidata:Q27098160 | Co-enzyme |
THF | Metabolite | wikidata:Q168453 | Co-enzyme |
Gln | Metabolite | wikidata:Q181619 | Substrate |
H2O | Metabolite | chebi:15377 | Inorganic molecules |
Glu | Metabolite | chebi:16015 | Substrate |
P(i) | Metabolite | wikidata:Q177811 | Inorganic molecules |
Mg2+ | Metabolite | wikidata:Q26987404 | Metal Ion |
P(i) | Metabolite | wikidata:Q177811 | Inorganic molecules |
Mg2+ | Metabolite | wikidata:Q26987404 | Metal Ion |
HCO3 - | Metabolite | wikidata:Q409202 | Inorganic molecules |
P(i) | Metabolite | wikidata:Q177811 | Inorganic molecules |
Mg2+ | Metabolite | wikidata:Q26987404 | Metal Ion |
P(i) | Metabolite | wikidata:Q177811 | Inorganic molecules |
Asp | Metabolite | wikidata:Q178450 | Substrate |
Mg2+ | Metabolite | wikidata:Q26987404 | Metal Ion |
Fumarate | Metabolite | wikidata:Q139857 | Substrate |
P(i) | Metabolite | wikidata:Q177811 | Inorganic molecules |
Moco (active) | Metabolite | chebi:82685 | 'In addition to the dithiolene sulfurs of the pterin moiety and two oxo groups, the molybdenum atom of Moco needs the addition of a terminal inorganic sulfur to provide enzyme activity to these enzymes (55). This final step is catalyzed by the Moco sulfurase protein (ABA3 in plants and HMCS in humans) ' [PMID:23539623]. HMCS is an alternative name for MOCOS (in UniProt, https://www.uniprot.org/uniprotkb/Q96EN8/entry) |
MOCOS | Protein | uniprot:Q96EN8 | |
AO | Protein | uniprot:Q06278 | Aldehyde oxidase (AO) is a metabolizing enzyme, located in the cytosolic compartment of tissues in many organisms. AO catalyzes the oxidation of aldehydes into carboxylic acid, and in addition, catalyzes the hydrozylation of some heterocycles.[1] It can also catalyze the oxidation of both cytochrome P450 (CYP450) and monoamine oxidase (MAO) intermediate products. AO plays a very important role in the metabolization of numerous drugs.'Aldehyde oxidase (AO) and xanthine oxidase (XO) belong to a family of molybdo-flavoenzymes that catalyze the oxidation of nitrogen-containing aromatic heterocycles.' [PMID:28939686] |
APRT | Protein | uniprot:P07741 | |
RRM2B | Protein | uniprot:Q7LG56 | |
ATIC | Protein | uniprot:P31939 | |
ADA | Protein | uniprot:P00813 | aka Adenosine deaminase |
ADSL | Protein | uniprot:P30566 | |
GRM5 | Protein | uniprot:P41594 | Metabotropic glutamate receptor 5 |
MAT2A | Protein | uniprot:P31153 | |
PRPS1 | Protein | uniprot:P60891 | |
ADSS | Protein | uniprot:P30520 | Adenylosuccinate synthetase isozyme 2 |
ADSL | Protein | uniprot:P30566 | |
PRPPs | Protein | eccode:2.7.6.1 | |
IMPDH1 | Protein | uniprot:P20839 | |
HPRT1 | Protein | uniprot:P00492 | |
DGUOK | Protein | uniprot:Q16854 | |
AMPD1 | Protein | uniprot:P23109 | |
PNP | Protein | uniprot:P00491 | |
ITPA | Protein | uniprot:Q9BY32 | |
RR | Protein | eccode:1.17.4.1 | ribonucleotide reductase |
PPAT | Protein | uniprot:Q06203 | |
TPMT | Protein | uniprot:P51580 | |
PNP | Protein | uniprot:P00491 | |
PNP | Protein | uniprot:P00491 | |
XO | Protein | uniprot:P47989 | AKA XDH |
PNP | Protein | uniprot:P00491 | |
RR | Protein | eccode:1.17.4.1 | |
ATIC | Protein | uniprot:P31939 | |
ADA | Protein | uniprot:P00813 | |
PNP | Protein | uniprot:P00491 | |
HPRT1 | Protein | uniprot:P00492 | |
GART(E1) | Protein | uniprot:P22102 | |
GART(E2) | Protein | uniprot:P22102 | |
PFAS | Protein | uniprot:O15067 | |
PAICS(E1) | Protein | uniprot:P22234 | |
GART(E3) | Protein | uniprot:P22102 | |
PAICS(E2) | Protein | uniprot:P22234 | |
ADSL | Protein | uniprot:P30566 | |
XO | Protein | uniprot:P47989 | aka Xanthine oxidase; 'Aldehyde oxidase (AO) and xanthine oxidase (XO) belong to a family of molybdo-flavoenzymes that catalyze the oxidation of nitrogen-containing aromatic heterocycles.' [PMID:28939686] |
XO | Protein | uniprot:P47989 | AKA XDH |
PNP | Protein | uniprot:P00491 |
References
- Su HC, Lenardo MJ. Combined Immune Deficiencies. In: Stiehm’s Immune Deficiencies [Internet]. Elsevier; 2014. p. 143–69. Available from: http://dx.doi.org/10.1016/B978-0-12-405546-9.00005-4 DOI
- The molybdenum cofactor. Mendel RR. J Biol Chem. 2013 May 10;288(19):13165–72. PubMed Europe PMC Scholia
- Species-Specific Involvement of Aldehyde Oxidase and Xanthine Oxidase in the Metabolism of the Pyrimidine-Containing mGlu5-Negative Allosteric Modulator VU0424238 (Auglurant). Crouch RD, Blobaum AL, Felts AS, Conn PJ, Lindsley CW. Drug Metab Dispos. 2017 Dec;45(12):1245–59. PubMed Europe PMC Scholia