lipidmaps-wp-curation

WikiPathways WP5181

• WikiPathways: WP5181 (classic)
• Species: Homo sapiens
• Scholia: WP5181
• WPRDF file: wp/Human/WP5181.ttl
• GPMLRDF file: wp/gpml/Human/WP5181.ttl
• SBML file: sbml/WP5181.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 1
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 6
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 9 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 3

Fails

Interactions with Labels

Interactions found that involve Labels: 1

• http://classic.wikipathways.org/instance/WP5181_rr134495 “ER Stress” with graphId e791a

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

Interactions with unconnected points

Interactions with unconnected points: 2

• http://classic.wikipathways.org/instance/WP5181_rr134495

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 6

http://classic.wikipathways.org/instance/WP5181_rr134495 Palmitoyl-CoA has CHEBI:15525 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5181_rr134495 Palmitate has CHEBI:15756 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5181_rr134495 ceramide has CHEBI:52639 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5181_rr134495 Sphingomyelin has CHEBI:89490 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5181_rr134495 OA has HMDB0000207 from HMDB but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP5181_rr134495 Oleic acid has HMDB0000207 from HMDB but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS