lipidmaps-wp-curation

WikiPathways WP4524

• WikiPathways: WP4524 (classic)
• Species: Homo sapiens
• Scholia: WP4524
• WPRDF file: wp/Human/WP4524.ttl
• GPMLRDF file: wp/gpml/Human/WP4524.ttl
• SBML file: sbml/WP4524.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • UnconnectedPoints: .x we found 1 problem(s):
    • Interactions with unconnected points: 1
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 19
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 9 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 2

Fails

Interactions with unconnected points

Interactions with unconnected points: 1

• http://classic.wikipathways.org/instance/WP4524_rr137926

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/UnconnectedPoints

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 19

http://classic.wikipathways.org/instance/WP4524_rr137926 17-hydroxyallopregnanolone has CHEBI:11909 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Androstanedione has CHEBI:15994 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Androsterone has CHEBI:16032 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Cholesterol has CHEBI:16113 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Dihydrotestosterone (DHT) has CHEBI:16330 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Androst-4-ene- 3,17-dione has CHEBI:16422 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Androstenedione has CHEBI:16422 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Pregnenolone has CHEBI:16581 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Progesterone has CHEBI:17026 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Testosterone has CHEBI:17347 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 Androstanediol has CHEBI:27727 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 DHEA has CHEBI:28689 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 17-hydroxydihydroprogesterone has CHEBI:36723 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 NAD+ has CHEBI:57540 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 NADPH has CHEBI:57783 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 NADH has CHEBI:57945 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 NADP+ has CHEBI:58349 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 17-hydroxyprogesterone has HMDB0000374 from HMDB but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4524_rr137926 17-Hydroxypregnenolone has Q2064889 from Wikidata but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS