lipidmaps-wp-curation

WikiPathways WP4153

• WikiPathways: WP4153 (classic)
• Species: Homo sapiens
• Scholia: WP4153
• WPRDF file: wp/Human/WP4153.ttl
• GPMLRDF file: wp/gpml/Human/WP4153.ttl
• SBML file: sbml/WP4153.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 9 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests
  • retiredIdentifiers: .. all OK!
  • onlyLIPIDMAPS: .x we found 1 problem(s):
    • Expected a LIPID MAPS identifier, but found other identifiers: 21
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 9 tests OK!
• PathwayTests: all 11 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 14 tests OK!

Summary

• Number of test classes: 21
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 1

Fails

Only LIPID MAPS identifiers

Expected a LIPID MAPS identifier, but found other identifiers: 21

http://classic.wikipathways.org/instance/WP4153_rr139763 Digalactosylceramide has 134506 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Digalactosylceramide alpha has 134506 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 globotriaosylceramide has 66616222 from PubChem-compound but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Digalactosylceramide has CHEBI:134506 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Digalactosylceramide alpha has CHEBI:134506 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Digalactosylceramide beta has CHEBI:134507 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Ceramide has CHEBI:17761 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 GM1 has CHEBI:18216 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Globoside example 2 has CHEBI:18259 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 GA2 has CHEBI:27731 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 GA1 has CHEBI:27938 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Globoside has CHEBI:61360 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 GM3 has CHEBI:79210 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 GM2 has CHEBI:79218 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Globoside example 1 has CHEBI:88167 from ChEBI but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 galactosyl-ceramide has Q2756638 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 lactosylceramide has Q3215908 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Glucosylceramide has Q35662896 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Sulfatide has Q408584 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Sphingomyelin has Q423143 from Wikidata but expected a LIPID MAPS identifier
http://classic.wikipathways.org/instance/WP4153_rr139763 Sphingosine has Q46298 from Wikidata but expected a LIPID MAPS identifier

More details at https://www.wikipathways.org/WikiPathwaysCurator/LIPIDMAPSTests/onlyLIPIDMAPS