Download Pathways
From WikiPathways
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Choose one of the file types below to download a set of pathways in that format. Choose between the following sets:
- Categorized pathways
- Only pathways that have been explicitly categorized. This includes pathways that have been carefully curated and typically excludes draft or test pathways not intended for distribution. (recommended)
- All pathways
- All pathways on the wiki, including draft or test pathways (such as the Sandbox pathway).
GPML
Click on one of the links below to download all pathways in GPML format. You can view and edit GPML files in PathVisio. From PathVisio you can also export these files to the [www.genmapp.org GenMAPP] mapp format and PDF.
| All pathways | Categorized pathways |
|---|---|
Eu.Gene
Click on one of the links below to download all pathways in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).
| All pathways | Categorized pathways |
|---|---|
Plain text
Click on one of the links below to download all pathways in plain text format. This format contains a list of all datanodes, with the identifier in the first column, and the database system in the second column.
| All pathways | Categorized pathways |
|---|---|
Click on one of the links below to download all pathways in Portable Document Format (PDF).
| All pathways | Categorized pathways |
|---|---|
SVG
Click on one of the links below to download all pathways in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.
| All pathways | Categorized pathways |
|---|---|
PNG
Click on one of the links below to download all pathways in the Portable Network Graphics (png) format.
| All pathways | Categorized pathways |
|---|---|
Flatfile
Click on one of the links below to download all pathways in either a tab-delimited or HTML table format. The output includes gene, protein and small molecule contents.
